PRECIS: Protein reports engineered from concise information in SWISS-PROT
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منابع مشابه
PRECIS: Protein reports engineered from concise information in SWISS-PROT
MOTIVATION There have been several endeavours to address the problem of annotating sequence data computationally, but the task is non-trivial and few tools have emerged that gather useful information on a given sequence, or set of sequences, in a simple and convenient manner. As more genome projects bear fruit, the mass of uncharacterized sequence data accumulating in public repositories grows ...
متن کاملPRECIS: An Automated Pipeline for Producing Concise Reports About Proteins
There have been several attempts at addressing the problem of annotating sequence data computationally. Annotation generation can be considered a pipeline of processes: first harvesting data from a variety of data sources, then distilling and transforming it into a form more appropriate for the end database. This task is usually performed by human annotators, a solution that is clearly not scal...
متن کاملThe SWISS-PROT protein sequence data bank.
SWISS-PROT is an annotated protein sequence database established in 1986 and maintained collaboratively, since 1988, by the Department of Medical Biochemistry of the University of Geneva and the EMBL Data Library BAIROCH, Amos Marc, BOECKMANN, Brigitte. The SWISS-PROT protein sequence data bank. Nucleic Acids Research, 1991, vol. 19 Suppl, p. 2247-9 DOI : 10.1093/nar/19.suppl.2247
متن کاملRepresentation of functional information in the SWISS-PROT Data Bank
Functional information in SWISS-PROT results, primarily, from assessment of articles reporting characterization. Predicted information is labeled with flags describing the evidence level (e.g. potential, probable, by similarity).
متن کاملFunctional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences
With the rapid growth of sequence databases, there is an increasing need for reliable functional characterisation and annotation of newly predicted proteins. To cope with such large data volumes, faster and more effective means of protein sequence characterisation and annotation are required. One promising approach is automatic large-scale functional characterisation and annotation, which is ge...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2003
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btg204